| Design of rapidly folding protein-like heteropolymer chains and their cell dynamics - a lattice model study, S. Vishveshwara, I. Shrivastava, M. Cieplak, and J. R. Banavar, Indian Institute of Science Journal 77, 339 (1997) | | |
| Master equation approach to protein folding and kinetic traps, M. Cieplak, M. Henkel, J. Karbowski, and J. R. Banavar, Phys. Rev. Lett. 80, 3654 (1998) | pdf | link |
| Folding in two-dimensional off-lattice models of proteins, M. S. Li and M. Cieplak, Phys. Rev. E 59, 970-976 (1999) | pdf | link |
| Coarse grained description of the protein folding, M. Cieplak and Trinh Xuan Hoang, Phys. Rev. E 58, 3589 (1998) | pdf | link |
| Protein folding and models of dynamics on the lattice, Trinh Xuan Hoang and M. Cieplak, J. Chem. Phys. 109, 9192 (1998) | pdf | link |
| Master equation approach to protein folding, M. Cieplak, M. Henkel, and J. R. Banavar, J. Cond. Mat. 2, 369 (1999) | pdf | |
| Scaling of folding properties in simple models of proteins, M. Cieplak, T. X. Hoang, and M. S. Li, Phys. Rev. Lett. 83, 1684 | pdf | link |
| Energy landscapes, supergraphs, and "folding funnels" in spin systems, P. Garstecki, T. X. Hoang, and M. Cieplak, Phys. Rev. E 60, 3219 (1999) | pdf | link |
| Simple models of proteins with repulsive non-native contacts, M. S. Li and M. Cieplak, Europ. Phys. Journal. B 14, 787-792 (2000) | | |
| Spin analogs of proteins: scaling of "folding" properties, T. X. Hoang, N. Sushko, M. S. Li, and M. Cieplak, J. Phys. A 33, 3977-3987 (2000) | pdf | |
| Lattice tube model of proteins, J. R. Banavar, M. Cieplak, and A. Maritan, Phys. Rev. Lett. 93, 238101 (2004) | pdf | link |
| Molecular dynamics of folding of secondary structures in Go-like models of proteins, T. X. Hoang and M. Cieplak, J. Chem. Phys. 112, 6851-6862 (2000) | pdf | link |
| Sequencing of folding events in Go-like proteins, T. X. Hoang and M. Cieplak, J. Chem. Phys. 113, 8319-8328 (2000) | pdf | link |
| Scaling of folding properties in Go models of proteins, M. Cieplak and T. X. Hoang, J. Biol. Phys. 26, 273-294 (2000) | pdf | |
| Dynamical chaos and power spectra in toy models of heteropolymers and proteins, M. S. Li, M. Cieplak, and N. Sushko, Phys. Rev. E 62, 4025-4031 (2000) | pdf | link |
| Kinetic non-optimality and vibrational stability of proteins, M. Cieplak and T. X. Hoang, Proteins: Structure, Function and Genetics 44, 20-25 (2001) | pdf | link |
| The range of the contact interactions and the kinetics of the Go models of proteins, M. Cieplak and T. X. Hoang, Int. J. Mol. Phys. C 13, 1231-1242 (2002) - 2003 | pdf | |
| Universality classes in folding times of proteins, M. Cieplak and Trinh Xuan Hoang, Biophys. J. 84, 475-488 (2003) | pdf | link |
| Folding of proteins in Go models with angular interactions, M. Cieplak and T. X. Hoang, Physica A 330, 195-205 (2003) | pdf | link |
| Cooperativity and contact order in protein folding, M. Cieplak, Phys. Rev. E 69, 031907 (2004) | pdf | link |
| Chirality and protein folding, J. I. Kwiecinska and M. Cieplak, J. Phys. Cond. Mat. 17, S1565-S1580 (2005) | pdf | |
| Thermal folding and mechanical unfolding pathways of protein secondary structures, M. Cieplak, T. X. Hoang, and M. O. Robbins, Proteins: Function, Structure, and Genetics 49, 104-113 (2002) | pdf | link |
| Folding and stretching in a Go-like model of titin, M. Cieplak, T. X. Hoang, and M. O. Robbins, Proteins: Function, Structure, and Genetics 49, 114-124 (2002) | pdf | link |
| Stretching of proteins in the entropic limit, M. Cieplak, T. X. Hoang, and M. O. Robbins, Phys. Rev. E 69, 011912 (2004) | pdf | link |
| Thermal effects in stretching of Go-like models of titin and secondary structures, M. Cieplak, T. X. Hoang, and M. O. Robbins, Proteins: Struct. Funct. Bio. 56, 285-297 (2004) | pdf | link |
| Stretching of homopolymers and contact order, M. Cieplak, T. X. Hoang, and M. O. Robbins, Phys. Rev. E 70, 011917 (2004) | pdf | link |
| Mechanical properties of the domains of titin in a Go-like model, M. Cieplak, A. Pastore, and T. X. Hoang, J. Chem. Phys. 122, 054906 (2005) | pdf | link |
| Mechanical stretching of proteins: calmodulin and titin, M. Cieplak, Physica A 352/1, 28-42 (2005) | pdf | link |
| Mechanical unfolding of ubiquitin molecules, M. Cieplak and P. E. Marszalek, J. Chem. Phys. (in press) | pdf | |
| Protein threading by learning, I. Chang, M. Cieplak, R. I. Dima, A. Maritan, and J. R. Banavar, Proc. Natl. Acad. Sci., 14351-14355 (2001) | pdf | link |
| Prediction of protein secondary structures from conformational biases, T. X. Hoang, M. Cieplak, J. R. Banavar, and A. Maritan, Proteins: Function, Structure, and Genetics 48, 558-565 (2002) | pdf | link |
| Assembly of protein tertiary structures from secondary structures by simulated annealing with optimized potentials, T. X. Hoang, F. Seno, J. R. Banavar, M. Cieplak, and A. Maritan, Proteins: Function, Structure, and Genetics 52, 155-165 (2003) | pdf | link |
| Delineation of the native basin in continuum models of proteins, M. S. Li and M. Cieplak, J. Phys. A 32, 5577-5584 (1999) | | |
| Amino acid classes and the protein folding problem, M. Cieplak, N. S. Holter, A. Maritan, and J. R. Banavar, J. Chem. Phys. 114, 1420-1423 (2001) | pdf | link |
| M. Cieplak and A. Sienkiewicz, Proteins, article (in Polish) for the Physics Encyclopedia, Polish Scientific Publishing House 2003 | pdf | link |
| What one can learn from experiments about the elusive transition state?, I. Chang, M. Cieplak, J. R. Banavar, and A. Maritan, Protein Science 13, 2446-2457 (2004) | pdf | |
| Geometry of proteins: hydrogen bonding, sterics and marginally compact tubes, J. R. Banavar, M. Cieplak, A. Flammini, T. X. Hoang, R. D. Kamien, T. Lezon, D. Marenduzzo, A. Maritan, F. Seno, Y. Snir, A. Trovato, q-bio.BM/0505052 | | |
| Thermal unfolding of proteins, M. Cieplak and J. I. Sulkowska, J. Chem. Phys. (in press) | pdf | |
| Two Bose fluid picture of a Heisenberg ferromagnet, M. Cieplak and L. A. Turski, Z. Phys. B 23, 355 (1976) | | |
| Spin-wave theory of the paramagnetic phase boundary in transversally anisotropic antiferromagnets, M. Cieplak, Phys. Rev. B 15, 5310 (1977) | | link |
| Spin waves in systems with weak exchange fields, M. Cieplak and F. Keffer, Phys. Rev. B 18, 1253 (1978) | | link |
| Localized model for systems with double- exchange coupling, M. Cieplak, Phys. Rev. B 18, 3470 (1978) | pdf | link |
| Solitons in quantum Heisenberg chain, M. Cieplak and L. A. Turski, J. Phys. C 13, 5741 (1980) | | |
| Magnetic solitons and elastic shock waves in classical compressible Heisenberg chain, M. Cieplak and L. A. Turski, J. Phys. C 13, L777 (1980) | | |
| Dynamical correlations in one-dimensional easy plane magnets, M. Cieplak and A. Sjolander, J. Phys. C 14, 4861 (1981) | | |
| Density of electronic states in granular metals, M. Cieplak, J. Phys. F 14, 609 (1984) | | |
| Renormalization group analysis on fractals: Ising spin glass and the Schrodinger equation, J. R. Banavar and M. Cieplak, Phys. Rev. B 28, 3813 (1983) | | link |
| Critical phenomena in fluid invasion: transitions in growth morphology, M. Cieplak and M. O. Robbins, in Surface Disordering: Growth, Roughening and Phase Transitions, eds. R. Julien, J. Kertesz, P. Meakin, and D. E. Wolf (Les Houches workshop), Nova Sci. Publ., New York, 1992, p. 185 | | |
| Growth in systems in quenched disorder, M. O. Robbins, M. Cieplak, H. Ji, B. Koiller, and N. Martys, in Proceedings of the NATO School on Growth Patterns in Physical Science and Biology, Granada, Spain, 1991, ed. L. Sander and P. Meakin (Plenum Press, New York, 1992) | | |
| Fractal domains in Ising spin glasses, M. Cieplak and M. S. Li, Fractals 2, 481 (1994) | | |
| Domain walls in the transverse field Ising spin glasses, M. S. Li and M. Cieplak, Fractals 4, 401 (1996) | | |
| Optimal paths and growth processes, M. Cieplak, A. Maritan, J. R. Banavar, Physica A 266, 291 (1999) | pdf | link |
| Nature of ordering in spin glasses, J. R. Banavar and M. Cieplak, Phys. Rev. Lett. 48, 832 (1982) | pdf | link |
| Influence of boundary conditions on random unfrustrated magnetic systems, J. R. Banavar, M. Cieplak, and M. Z. Cieplak, Phys. Rev. B 26, 2482 (1982) | | link |
| Scaling stiffness of spin glasses, J. R. Banavar and M. Cieplak, J. Phys. C 16, L755 (1983) | | |
| Lower critical dimensionality of Heisenberg spin glasses, M. Cieplak and J. R. Banavar, Phys. Rev. B 29, 469 (1984) | | link |
| Dynamics of frustrated spin clusters, J. R. Banavar, M. Cieplak, and M. Muthukumar, J. Phys. C 18, L157 (1985) | | |
| Dynamical susceptibility of frustrated spin clusters, M. Cieplak and J. Lusakowski, J. Phys. C 19, 5253 (1986) | | |
| Metastable states in disordered ferromagnets, M. Cieplak and T. R. Gawron, J. Phys. A 20, 5657 (1987) | | |
| Dynamic spin susceptibility of semimagnetic semiconductors, M. Cieplak, M. Z. Cieplak, and J. Lusakowski, Phys. Rev. B 36, 620 (1987) | | link |
| Hidden valley structure of Ising spin glasses, M. Cieplak and J. Jaeckle, Zeit. Phys. B 66, 325 (1987) | | |
| Dynamic specific heat of spin glasses - studies of a 6-spin cluster, M. Cieplak and G. Szamel, Phys. Rev. B 37, 1790 (1988) | | link |
| Nature of ordering in Potts spin glasses, J. R. Banavar and M. Cieplak, Phys. Rev. B 40, 4613 (1989) | | link |
| Scaling of stiffness in Ising spin glasses, M. Cieplak and J. R. Banavar, J. Phys. A 23, 4385 (1990) | | |
| Ordering characterized by a strange attractor, B. Sundaram, M. Cieplak, and J. R. Banavar, Phys. Rev. A (Rapid Comm.) 41, 5713 (1990) | | link |
| Scaling of energy barriers in Ising spin glasses, T. R. Gawron, M. Cieplak, and J. R. Banavar, J. Phys. A 24, L127 (1991) | | |
| Gauge invariance and the vortex glass, M. Cieplak, J. R. Banavar, and A. Khurana, J. Phys. A 24, L145 (1991) | | |
| Frustration, scaling, and local gauge invariance, M. Cieplak, J. R. Banavar, M. S. Li, and A. Khurana, Phys. Rev. B 45, 786 (1992) | | link |
| Universality and chaos in XY spin glasses, M. Cieplak, M. S. Li, and J. R. Banavar, Phys. Rev. B 47, 5022 (1993) | | link |
| Chaos in gauge glasses in the critical region, M. S. Li and M. Cieplak, Physica A, 197, 507 (1993) | | link |
| Scaling properties of quantum spin glasses, M. S. Li and M. Cieplak, Physica A 207, 463 (1994) | | link |
| Ordering and phase transitions in random-field Ising systems, A. Maritan, M. R. Swift, M. Cieplak, M. H. W. Chan, M. W. Cole, and J. R. Banavar, Phys. Rev. Lett. 67, 1821 (1991) | pdf | link |
| Random-anisotropy Blume-Emery-Griffiths model, A. Maritan, M. Cieplak, M. R. Swift, F. Toigo, and J. R. Banavar, Phys. Rev. Lett. 69, 221 (1992) | pdf | link |
| Phase diagrams for random field Ising systems, M. R. Swift, A. Maritan, M. Cieplak, and J. R. Banavar, J. Phys. A 27, 1525 (1994) | | |
| Dipole interactions with random anisotropy: a local mean field study, M. Zaluska-Kotur and M. Cieplak, Europhys. Lett. 23, 85 (1993). | | |
| Glassy properties of dilute dipolar Ising systems, M. Zaluska-Kotur and M. Cieplak, J. M. M. M. 136, 127 (1994) | | |
| Nematic-isotropic transition in porous media, A. Maritan, M. Cieplak, T. Bellini, and J. R. Banavar, Phys. Rev. Lett. 72, 4113 (1994) | pdf | link |
| Scaling of the random field Ising model at zero temperature, M. R. Swift, A. J. Bray, A. Maritan, M. Cieplak, and J. R. Banavar, Europh. Lett. 38, 273 (1997) | | |
| Effects of pore walls and randomness in phase transitions in porous media, M. Cieplak, A. Maritan, F. Toigo, M. H. W. Chan, and J. R. Banavar, Phys. Rev. E 66, 056124 (2002) | pdf | link |
| Optimal paths and domain walls in the strong disorder limit, M. Cieplak, A. Maritan, and J. R. Banavar, Phys. Rev. Lett. 72, 2320 (1994) | pdf | link |
| Optimal paths and universality, M. Cieplak, A. Maritan, M. Swift, A. Bhattacharya, A. L. Stella, and J. R. Banavar, J. Phys. A 28, 5693 (1995) | | |
| Domain walls in the quantum transverse Ising model, M. Henkel, A. B. Harris, and M. Cieplak, Phys. Rev. B 52, 4371 (1995) | | link |
| Invasion percolation and Eden Growth: Geometry and Universality, M. Cieplak, A. Maritan, and J. R. Banavar, Phys. Rev. Lett. 76, 3754 (1996) | pdf | link |
| Optimal paths and growth processes, M. Cieplak, A. Maritan, J. R. Banavar, Physica A 266, 291 (1999) | pdf | link |
| Surface conduction and length scales in porous media, J. R. Banavar, M. Cieplak, and D. L. Johnson, Phys. Rev. B (Rapid Comm.) 37, 7975 (1988) | | link |
| Dynamical phase transition in fluid flows in porous media, M. Cieplak and M. O. Robbins, Phys. Rev. Lett. 60, 2042 (1988) | pdf | link |
| Critical phenomena in fluid invasion of porous media, N. Martys, M. Cieplak, and M. O. Robbins, Phys. Rev. Lett. 66, 1058 (1991); reprinted in Dynamics of Fractal Surfaces, ed. F. Family and T. Vicsek, World Scientific, Singapore 1991, p. 419 | pdf | link |
| Scaling relations for interface motion through disordered media: Application to two-dimensional fluid invasion, N. Martys, M. O. Robbins, and M. Cieplak, Phys. Rev. B 44, 12294 (1991) | pdf | link |
| Effects of pore walls and randomness in phase transitions in porous media, M. Cieplak, A. Maritan, F. Toigo, M. H. W. Chan, and J. R. Banavar, Phys. Rev. E 66, 056124 (2002) | pdf | link |
| Cellular automata studies of mixing in chaotic systems, M. Cieplak, U. D'Ortona, D. Salin, R. B. Rybka, and J. R. Banavar, Comp. Mat. Sci. 1, 87 (1992) | | |
| Cellular automata studies of circular Couette Flows: chaotic mixing, R. B. Rybka, M. Cieplak, U. D'Ortona, D. Salin, and J. R. Banavar, Phys. Rev. E 48, 757 (1993) | | link |
| Two-color Boltzmann cellular automata: surface tension and wetting, U. d'Ortona, D. Salin, M. Cieplak, R. B. Rybka, and J. R. Banavar, Phys. Rev. E 51, 3718 (1995) | pdf | link |
| Rupture and coalescence in two-dimensional cellular automata fluids, M. Cieplak, Phys. Rev. E 51, 4353 (1995) | pdf | link |
| Applications of statistical mechanics in subcontinuum fluid dynamics, M. Cieplak, J. Koplik, and J. R. Banavar, Physica A 274, 281-293 (1999) | pdf | link |
| Molecular dynamics of flows in the Knudsen regime, M. Cieplak, J. Koplik, and J. R. Banavar, Physica A 287, 153-160 (2000) | pdf | link |
| Boundary conditions at a fluid - solid interface, M. Cieplak, J. Koplik, and J. R. Banavar, Phys. Rev. Lett. 86, 803-806 (2001) | pdf | link |
| Motion of grains, droplets and bubbles in fluid-filled nano-pores, Phys. Rev. E 64, 021601 (2001) | pdf | link |
| Molecular dynamics simulations of crystallization of hard spheres, I. Volkov, M. Cieplak, J. Koplik, and J. R. Banavar, Phys. Rev. E 66, 061401 (2002) | pdf | link |