Experimental techniques of
contemporary high-resolution spectroscopy can result
in a deluge of
experimental data in the form of multi-million point
length spectra
containing well over 100000 lines. The associated data
reduction
problem is being actively tackled in several research
groups and below
is a brief summary and starting links to the various
approaches that
have been developed.
All
packages are for the Windows world and all are
freely available from
the authors, either by a straightforward download or
on request. In
most cases emphasis has been placed on being able to
carry out
graphical analysis based on Looms-Wood type plots of
recorded spectra.
In this respect the interactive Loomis-Wood program
developed in the
Winnewisser laboratory in Giessen, Germany was of
pioneering importance.
The
current packages can be subdivided into several groups.
The first group
consists of those that stem from applications in
rotational
spectroscopy:
AABS,
CAAARS, DAPPERS,
JB95, LLWP, SMAP
(in alphabetical order)
A
second group of packages results from analysis of
vibration-rotation
spectra in the infrared:
ATIRS, Giessen Loomis-Wood,
INFIA,
Loomis-Wood
Add-In, LWW, PGOPHER, VMS-ROT (also in alphabetical order)
Most
of these packages, especially those based on the
SPFIT/SPCAT engine for
fitting and prediction, should in principle be able
to deal with both
pure-rotation, rotation-vibration and vibronic spectra.
Package: |
AABS
= Assignment and Analysis of Broadband Spectra |
Author: |
Zbigniew
KISIEL |
Institution: |
Institute
of
Physics, Polish Academy of Sciences, Warsaw,
Poland |
Website: |
http://info.ifpan.edu.pl/~kisiel/aabs/aabs.htm |
Download: |
All files
directly downloadable from the webpage |
Examples: |
Yes - a sample
project for lactic acid and mini-tutorial are on
the webpage |
The impulse to
write this package
came from the need to deal with FASSST spectra on
relatively low-end
computers. The package turned out to be very useful
for the analysis
also of the MMW rotational spectra recorded in our
Warsaw laboratory,
of supersonic expansion FTMW
spectra, and of rotation-vibration spectra from several synchrotron radiation based FTIR spectrometers.
AABS can
use several different packages for fitting/prediction. The input/output of two
packages can be used directly, and these are:
ASFIT/ASROT - straightforward asymmetric rotor treatment up to decadic terms,
SPFIT/SPCAT - general Hamiltonian for up to six quantum numbers.
Two additional packages can be used by means of available input/output reformatting programs:
ERHAM - Effective Rotational HAMiltonian fit,
RAM36 - Rho Axis Method internal rotor fit.
The AABS
package has
been described in:
- Z.Kisiel, L.Pszczolkowski,
I.R.Medvedev,
M.Winnewisser, F.C.De Lucia, E.Herbst, J.Mol.Spectrosc.
233,231-243(2005)
A list of applications is in Table 2 of:
- Z.Kisiel, L.Pszczolkowski,
B.J.Drouin, C.S.Brauer, S.Yu, J.C.Pearson, I.R.Medvedev, S.Fortman, C.Neese,
J.Mol.Spectrosc.
280,134-144(2012)
Package: |
CAAARS
= Computer Aided Assignment of Asymmetric Rotor Spectra |
Author: |
Ivan
MEDVEDEV |
Institution: |
Department
of
Physics, The Ohio State University, Columbus,
Ohio, USA |
Website: |
Vanished, but the author I.R.Medvedev is still in Academia, so might be contacted for package availability.
|
Download: |
The package needs the commercially
available Igor Pro
program for operation.
|
Examples: |
|
This
originated as an
in-house package to deal with the FASSST spectra
recorded at Ohio
State. The package has been used intensively in many
different
analyses by the OSU Microwave Group.
It has been designed to use SPCAT/SPFIT, and there
are rumours that it
also works with Peter Groner's ERHAM.
CAAARS
is
actually an add-on to the commercial IGOR PRO program,
so you have to
buy that first. If you are serious about
processing very extended
spectra then the purchase of IGOR PRO might be a good
step anyway, as
it is a very efficient, no-nonsense, program for
dealing with very
large datasets.
The CAAARS package has been described in:
- I.R.Medvedev, M.Winnewisser,
B.P.Winnewisser, F.C.De Lucia, E.Herbst, J.Mol.Struct.
742,
229-236 (2005)
Package: |
DAPPERS
= Data Analysis Package for Productive and Enthusiastic Rotational Spectroscopists |
Author: |
Nathan LOVE
|
Institution: |
Department of Chemistry, University of Minnesota, Minneapolis, USA |
Website: |
https://kleopold.chem.umn.edu/dappers |
Download: |
Installation package (200 MB zip file) available at the link on the bottom of the program website.
|
Examples: |
|
The DAPPERS package has been introduced and described in:
- N.Love, A.K.Huff, K.R.Leopold, "A new program for the assignment
and fitting of dense rotational spectra based on spectral progressions:
Application to the microwave spectrum of pivalic anhydride", J.Mol.Spectrosc. 370,
111294:1-7 (2020)
Package: |
JB95
Spectral
Fitting Program |
Author: |
David F.
PLUSQUELLIC |
Institution: |
Optical
Technology Division, National Institute of
Standards and Technology,
Gaithersburg, USA |
Website: |
https://www.nist.gov/services-resources/software/jb95-spectral-fitting-program |
Download: |
32-bit
and 64-bit versions are available in downloadable ZIP archives.
Links to the documentation are on the lower-right hand side of the web
page. |
Examples: |
Not available,
although the documentation is based upon a
discussion of a sample
project in the directory 1fnMW. The
contents of this
directory does not seem to be available on the
web but perhaps the
author will provide it if requested. |
This
package was created to
deal with the results of the broadband spectra
acquired by the NIST
auto-scanning FTMW spectrometer. The package
consists of the main jb95 GUI module, and three ancillary programs:
iar95
- |
calculation of
rotational
spectra |
quad95
- |
fitting of nuclear
quadrupole structure (single nucleus to 2nd
order perturbation theory) |
ga95
- |
fitting of
constants using
the genetic algorithm method |
Package: |
LLWP
= (Luis?) Loomis-Wood Plots |
Author: |
Luis BONAH
|
Institution: |
I. Physikalisches Institut
Universität zu Köln, Köln, Germany
|
Website: |
https://llwp.astro.uni-koeln.de |
Download: |
Available as Python code and a Windows installer.
|
Examples: |
Sample data available on the download page. |
The LLWP package has been introduced and described in:
- L.Bonah, O.Zingsheim, H.S.P. Müller, J-C.Guillemin, F.Lewen,
S.Schlemmer, "LLWP —A new Loomis-Wood software at the example of
Acetone-13C1", J.Mol.Spectrosc. 388,
111674:1-10 (2022)
Package: |
SMAP
SubMillimeter
Analysis Program |
Author: |
Brian
DROUIN ? |
Institution: |
Jet
Propulsion
Laboratory, Pasadena, California, USA |
Website: |
http://spec.jpl.nasa.gov/ftp/pub/calpgm/SMAP/ |
Download: |
Installation package directly
downloadable, but no
help system and no documentation. |
Examples: |
Not available. |
This is
an in-house package
for dealing with spectra recorded at jpl and
promises to do a lot once
you find out how to use it. Spectra can be in
several different
formats, among them simple ASCII two-column
frequency,intensity format
(called .dat in the input options).
Package: |
ATIRS
= Asymmetric Top InfraRed Spectra |
Author: |
Nicola
TASINATO et al. |
Institution: |
Dipartimento
di Chimica Fisica, Università Ca'
Foscari di Venezia, Venezia, Italy |
Website: |
|
Download: |
This
package is no longer available, but it has been described in Journal of
Molecular Spectroscopy, Volume 243, Issue 2, p. 148-154, DOI: 10.1016/j.jms.2007.02.016
|
Examples: |
|
This
package consists of
three modules:
VLW
- |
Visual Loomis Wood |
VCALPGM
- |
Visual CALPGM,
which is a
graphical front-end for Pickett's SPFIT/SPCAT |
VSS
- |
Visual Spectra
Simulator |
The
programs are written in Visual Basic 2005, hence the
requirement for
Microsoft .NET Framework 2.0. Note that you
typically will have to
download the: "Microsoft .NET
Framework Version
2.0 Redistributable Package (x86)" 22.4 Mb
and not, for example,
the ".NET Compact Framework 2.0 Service Pack 1
Redistributable" which
does not work, even though it implies that it is a
Service Pack to the
first package.
The package was
first
presented at the PRAHA2006 conference.
Package: |
Giessen Loomis-Wood |
Author: |
J.Reinstadler (earlier Turbo-Pacal 3.0 version), J.Behrend (later Turbo-Pascal 4.0 version)
|
Institution: |
Physikalisch-Chemisches Institut der Justus-Liebig-Universitiit, Giessen, Germany
I. Physikalisches Institut der Universitiit zu Koln, Koln, Germany
|
Website: |
Predates the internet website system so originally available "on request from the authors"
|
Download: |
Subversions
are still around in software archives of those associated with the
Giessen group, but require a suitable MS-DOS emulator for operation.
|
Examples: |
|
The name above is a
colloquially used loose description of several seminal programs developed in the
Giessen laboratory, jointly with Cologne laboratory (both in Germany).
These predate graphical operating systems but used interactive
MS-DOS based graphics for operation. A still very useful
description of the algorithm and features has been published in:
- B.P.Winnewisser, J.Reinstadler, K.M.T.Yamada, J.Behrend, "Interactive Loomis-Wood Assignment Programs", J.Mol.Spectrosc. 136,
12-16 (1989).
Package: |
INFIA
= Program for Rotational Analysis
of Linear
Molecule Spectra |
Author: |
Robert
BROTHERUS. |
Institution: |
Laboratory
of
Physical Chemistry, University of Helsinki,
Finland. |
Website: |
Vanished
|
Download: |
|
Examples: |
There used to be three
different projects: for CO, DCCBr, and CH3Br
(all included in the distribution package) |
This was
the first published
Windows program with Loomis-Wood graphical assignment
capabilities.
Developed for analysis of multistate linear-rotor
vibration-rotation
spectra, and can deal with the various possible
resonances.
A
comprehensive description of INFIA has been published in:
- R.Brotherus, J.Comput.Chem.
20,
610-622 (1999)
Package: |
Loomis-Wood
Add-In |
Author: |
Christopher
F.
NEESE |
Institution: |
Department
of
Physics, University of Chicago, Chicago, USA |
Website: |
http://fermi.uchicago.edu/freeware/LoomisWood.shtml
|
Download: |
Package
documentation and tutorial are available on the
web page, and the
package itself can be downloaded after typing in
your email.
You also need to get the commercially
available Igor Pro
program.
2023 update: website as stated above has vanished
|
Examples: |
Yes - a sample
project for ethylene is included in the
distribution package. |
This
package, as the name
implies, is in the form of a set of routines for the
versatile IGOR PRO
program for graphical analysis of data. It seems to
be tailored to be
used in analysis of spectra of linear molecules.
Considerable effort
has gone into documentation of this package. There
is a web-based
manual, a tutorial, as well as a help file added to
the Igor Pro help
system. The tutorial ends with a very apt paragraph,
which is
applicable to all packages compared on this page:
...
Remember, the Loomis-Wood Add-In is just a tool.
At all times, you need
to understand what you are doing to get meaningful
results. The add-in
is not a tool to allow novices to assign
complicated spectra. The
add-in is a tool to help spectroscopists assign
spectra faster with
fewer mistakes, since the add-in minimizes the
need to manually assign
and manipulate line-lists. In particular, do not
neglect to examine the
actual spectrum to make sure your assignments make
sense.
The package was presented at the 2005
OSU
Symposium.
Package: |
LWW
= Loomis Wood for Windows |
Author: |
Wieslaw
LODYGA
et al. |
Institution: |
Department
of
Chemistry, Adam Mickiewicz University, Poznan,
Poland |
Website: |
http://www.lww.amu.edu.pl/ |
Download: |
Documentation
available on the website, package is sent by the
authors on request. |
Examples: |
None available,
although the authors provided a sample project
for LWW
when requested. |
This
program comes in two
flavours:
LWW
- |
for symmetric top molecules |
LWWa
- |
for asymmetric top molecules
(just
announced) |
The format of
input and
output files is configurable so it is possible to
combine the programs
with different fitting/prediction packages. The
default fitting program
for LWW
is Petr
Pracna's SimFit, and the quantisation is J,K,l,v.
LWWa
is
stated to work with SPFIT/SPCAT, using J,Ka,Kc,v
quantisation.
The package was
first
presented at the PRAHA2006 conference.
Package: |
PGOPHER, a program for
simulating rotational
structure |
Author: |
Colin
WESTERN |
Institution: |
School
of
Chemistry, University of Bristol, UK |
Website: |
http://pgopher.chm.bris.ac.uk/ |
Download: |
Installation package directly
downloadable, help
system in the program, extensive online
documentation on the author's
website. |
Examples: |
Sample data files
, as well as interactive samples are available
on the website |
The
program promises
not only to simulate, but also to fit rotational
structure in
vibrational of electronic spectra of linear, symmetric
and asymmetric
top molecules. Interstate interactions can be
accounted for, and it
appears that pure rotational spectra can also be dealt
with. Frequency
calibration of
The package was
presented in communication TH12 at the 62nd OSU
Symposium, 2007. PGOPHER has also been described in the following journal publications:
-
C.M.Western, "PGOPHER: A program for simulating rotational, vibrational and electronic spectra", J.Quant.Spectrosc.Radiat.Transf. 186, 221-242 (2017)
-
C.M.Western and B.E.Billinghurst, "Automatic assignment and fitting of spectra with PGOPHER", Phys.Chem.Chem.Phys. 19, 10222-10226 (2017)
Regrettably the
author is now deceased, although the program website (as of 2023) is
active.
Package: | VMS-ROT,
a module for dealing with rotational spectra as part of the VMS package |
Author: |
Daniele LICARI et al. |
Institution: |
Scuola Normale Superiore, Pisa, Italy |
Website: |
http://dreamslab.sns.it/vms/index.php?pag=vmsrot |
Download: | 2017: By request, under the "Download" tab on the website. Requires Java for operation.
2023: The website link provided above is no longer active.
|
Examples: | In the form of several tutorial movies.
|
This module is one of the
VMS Draw tools being part of the Virtual Multi-spectral Spectrometer
package under development in Pisa.
It was
introduced in D.Licari, N.Tasinato, L.Spada, C.Puzzarini, V.Barone, J.Chem. Theory Comput. 13, 4382-4396 (2017).
|